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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
36
ChIP-seq
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
0
siRNA RNA-seq
Assay category
36
DNA binding
Target of assay
93
histone
histone modification
49
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
12
August, 2017
5
December, 2017
4
June, 2019
4
November, 2017
3
November, 2019
3
October, 2019
2
May, 2019
2
May, 2021
1
August, 2021
Available data
36
bam
21
fastq
11
bigWig
9
bed narrowPeak
7
bigBed narrowPeak
3
tagAlign
2
bed broadPeak
2
bigBed broadPeak
Organism
36
Homo sapiens
Biosample type
26
primary cell
7
in vitro differentiated cells
3
cell line
Organ
449
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
36
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
epithelial cell of proximal tubule
3
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
+ See 4 more…
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
3
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