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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
3
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
3
July, 2019
Available data
199
bam
175
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
tsv
1
tagAlign bed3+
Organism
221
Homo sapiens
Biosample type
209
tissue
12
primary cell
Organ
553
liver
295
pancreas
227
heart
221
brain
196
epithelium
157
connective tissue
116
kidney
108
vasculature
105
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
40
musculature of body
36
artery
35
nerve
22
embryo
20
spleen
17
vein
9
lung
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
221
AMP
Genome assembly (visualization)
174
GRCh38
126
hg19
Lab
221
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
August, 2018
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
single cell RNA-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
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