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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
731
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
731
DNA binding
28
DNA accessibility
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
156
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
April, 2020
10
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
August, 2021
6
September, 2017
2
February, 2023
2
March, 2020
1
August, 2022
1
May, 2022
Available data
647
bam
533
bed narrowPeak
532
bigWig
359
bigBed narrowPeak
179
tagAlign
145
fastq
9
bed broadPeak
3
bed bed3+
1
tagAlign bed3+
1
txt
Organism
758
Homo sapiens
Biosample type
759
tissue
484
cell line
282
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
209
brain
123
heart
107
liver
73
blood vessel
73
vasculature
72
pancreas
66
limb
35
nerve
33
kidney
28
artery
24
connective tissue
23
adipose tissue
20
spleen
10
lung
8
musculature of body
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
737
AMP
12
T1D
10
LungMap
Genome assembly (visualization)
526
GRCh38
446
hg19
Lab
693
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
2
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ChIP-seq
snATAC-seq
tissue
liver
97
left cardiac atrium
40
islet of Langerhans
29
7
body of pancreas
35
heart left ventricle
35
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