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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
280
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
280
DNA binding
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
53
August, 2017
44
October, 2018
43
December, 2017
27
October, 2019
26
May, 2019
23
May, 2020
20
April, 2019
12
November, 2017
10
November, 2018
7
December, 2018
6
September, 2017
5
May, 2024
3
February, 2021
3
October, 2017
1
January, 2019
Available data
257
bam
147
fastq
94
bigWig
76
bed narrowPeak
65
bigBed narrowPeak
52
tagAlign
16
bed bed3+
3
tsv
Organism
282
Homo sapiens
Biosample type
446
cell line
283
tissue
86
in vitro differentiated cells
42
primary cell
1
stem cell
Organ
86
liver
44
pancreas
41
adipose tissue
41
connective tissue
28
heart
25
brain
19
blood vessel
19
vasculature
17
limb
14
spleen
11
nerve
10
kidney
8
artery
4
musculature of body
Project
283
AMP
Genome assembly (visualization)
97
GRCh38
92
hg19
Lab
278
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
283 results
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Clear Filters
ChIP-seq
snDrop-seq
tissue
liver
81
islet of Langerhans
20
body of pancreas
18
spleen
14
subcutaneous adipose tissue
12
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