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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
92
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
92
DNA binding
Target of assay
80
control
9
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
81
February, 2021
66
November, 2017
21
August, 2021
14
October, 2019
8
January, 2019
4
March, 2020
4
May, 2021
4
November, 2018
3
November, 2019
Available data
569
bam
515
bigWig
425
fastq
bed narrowPeak
353
bigBed narrowPeak
113
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
205
Homo sapiens
Biosample type
1343
tissue
300
primary cell
224
in vitro differentiated cells
205
cell line
1
stem cell
Organ
85
liver
54
artery
54
blood vessel
54
heart
54
vasculature
42
pancreas
36
epithelium
8
embryo
7
kidney
6
blood
6
bodily fluid
Project
203
AMP
2
T1D
Genome assembly (visualization)
123
hg19
104
GRCh38
Lab
192
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
Capture-C
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
205 results
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total RNA-seq
ChIP-seq
cell line
HepG2
14
71
smooth muscle cell of the coronary artery
52
2
EndoC_BH1
33
2
H1-hESC
8
Panc1
7
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