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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
289
DNA binding
89
Transcription
Target of assay
193
histone modification
192
histone
105
broad histone mark
86
narrow histone mark
49
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
553
February, 2021
406
November, 2017
378
August, 2017
347
May, 2021
272
October, 2019
240
May, 2020
120
July, 2018
120
May, 2019
117
August, 2021
94
December, 2017
93
February, 2023
80
April, 2019
76
October, 2018
70
November, 2018
58
September, 2018
44
July, 2019
40
May, 2024
39
February, 2018
34
December, 2018
33
November, 2019
31
June, 2019
30
January, 2019
26
May, 2022
25
February, 2020
18
March, 2020
16
September, 2020
15
October, 2017
6
September, 2017
5
December, 2019
4
November, 2020
1
May, 2023
Available data
263
bam
263
fastq
254
bigWig
126
bed narrowPeak
89
tsv
78
tagAlign
33
bed bed3+
33
bed broadPeak
26
bigBed narrowPeak
13
bigBed broadPeak
Organism
378
Homo sapiens
Biosample type
258
tissue
67
in vitro differentiated cells
53
primary cell
Organ
176
pancreas
117
connective tissue
50
adipose tissue
48
liver
26
epithelium
22
musculature of body
Project
378
AMP
Genome assembly (visualization)
256
hg19
234
GRCh38
Lab
378
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
HiChIP
BIOSAMPLE
ASSAY
378 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
islet of Langerhans
42
89
liver
48
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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