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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
766
ChIP-seq
360
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
27
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
766
DNA binding
360
Transcription
Target of assay
371
transcription factor
277
histone
277
histone modification
142
broad histone mark
135
narrow histone mark
113
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
181
May, 2021
87
February, 2021
76
February, 2023
60
November, 2018
58
September, 2018
53
August, 2017
53
October, 2019
47
May, 2020
39
August, 2021
31
June, 2019
27
December, 2018
23
January, 2019
16
September, 2020
14
November, 2019
13
July, 2019
5
December, 2019
5
March, 2020
5
May, 2019
4
November, 2020
3
December, 2017
2
October, 2018
Available data
964
bam
916
bigWig
642
fastq
620
bed narrowPeak
410
bigBed narrowPeak
263
tsv
120
tagAlign
79
bed broadPeak
79
bigBed broadPeak
8
bed bed3+
3
tar
Organism
1126
Homo sapiens
Biosample type
tissue
597
cell line
526
primary cell
in vitro differentiated cells
3
stem cell
Organ
401
liver
234
epithelium
212
pancreas
83
vasculature
80
blood vessel
67
heart
60
artery
60
blood
60
bodily fluid
35
kidney
22
connective tissue
17
vein
11
musculature of body
9
brain
8
embryo
3
eye
1
adipose tissue
1
pericardium
Project
850
AMP
184
T1D
92
HPAP
Genome assembly (visualization)
913
hg19
810
GRCh38
Lab
792
AMP-T2D consortium
215
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
27
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
1
inconsistent control
Audit category:
57
missing controlled_by
Audit category:
33
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
1126 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
378
14
GM12878
60
smooth muscle cell of the coronary artery
6
52
EndoC_BH1
15
33
Panc1
13
+ See 7 more…
primary cell
monocyte
85
54
pancreatic alpha cell
13
52
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
pancreatic beta cell
13
21
+ See 55 more…
stem cell
hESC
3
See all biosamples
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