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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
68
ChIP-seq
26
ATAC-seq
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
93
Transcription
68
DNA binding
Target of assay
39
control
16
transcription factor
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
84
February, 2021
26
November, 2017
25
August, 2021
14
November, 2019
4
May, 2021
3
November, 2018
2
January, 2019
2
October, 2019
1
March, 2020
Available data
136
bam
116
bigWig
93
tsv
31
fastq
28
bed narrowPeak
6
tagAlign
2
bigBed narrowPeak
Organism
161
Homo sapiens
Biosample type
1865
tissue
462
primary cell
285
in vitro differentiated cells
161
cell line
Organ
56
artery
56
blood vessel
56
heart
56
vasculature
52
liver
46
pancreas
44
epithelium
4
blood
4
bodily fluid
Project
161
AMP
Genome assembly (visualization)
116
hg19
100
GRCh38
Lab
136
AMP-T2D consortium
25
Bing Ren, UCSD
Audit category:
44
inconsistent ontology term
Audit category:
1
missing controlled_by
replication_type!
isogenic
BIOSAMPLE
ASSAY
161 results
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Clear Filters
total RNA-seq
ChIP-seq
cell line
smooth muscle cell of the coronary artery
52
4
HepG2
9
43
EndoC_BH1
31
13
GM12878
4
Panc1
2
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