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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
72
DNA binding
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
37
May, 2021
14
August, 2017
8
June, 2019
8
October, 2019
3
November, 2017
1
August, 2021
1
May, 2019
Available data
40
bigWig
35
bam
31
bed narrowPeak
17
fastq
3
bed broadPeak
3
bigBed broadPeak
2
tagAlign
1
bigBed narrowPeak
Organism
72
Homo sapiens
Biosample type
317
tissue
138
cell line
78
in vitro differentiated cells
72
primary cell
Organ
26
epithelium
12
pancreas
9
vasculature
8
blood vessel
7
vein
3
brain
3
connective tissue
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
72
AMP
Genome assembly (visualization)
247
hg19
GRCh38
Lab
39
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assembly!
GRCh38
files.file_type!
tagAlign bed3+
xls
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
7
pancreatic alpha cell
6
pancreatic beta cell
6
cardiac fibroblast
2
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