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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
Assay category
125
DNA binding
Target of assay
70
control
40
transcription factor
15
histone
15
histone modification
10
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
Date released
145
August, 2017
125
November, 2017
75
May, 2021
54
October, 2019
31
May, 2020
29
October, 2018
27
August, 2021
17
December, 2017
16
April, 2019
13
May, 2019
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
4
December, 2018
4
January, 2019
4
September, 2017
2
November, 2019
1
February, 2021
Available data
111
bam
100
fastq
54
bigWig
33
bed narrowPeak
32
bigBed narrowPeak
24
tagAlign
15
bed broadPeak
14
bigBed broadPeak
3
tar
Organism
125
Homo sapiens
Biosample type
98
cell line
25
tissue
2
primary cell
Organ
98
liver
28
brain
2
epithelium
2
vasculature
blood vessel
Project
125
AMP
Genome assembly (visualization)
GRCh38
278
hg19
Lab
125
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
bed bed3+
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ChIP-seq
cell line
HepG2
98
tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
choroid plexus epithelial cell
1
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