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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
118
DNA binding
Target of assay
77
control
41
transcription factor
15
histone
histone modification
10
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
111
November, 2017
49
August, 2017
39
October, 2019
29
October, 2018
23
August, 2021
23
May, 2019
23
May, 2020
21
May, 2021
16
December, 2017
15
April, 2019
8
February, 2018
8
June, 2019
7
November, 2018
4
December, 2018
4
January, 2019
4
September, 2017
3
February, 2021
3
October, 2017
2
November, 2019
Available data
117
bam
106
fastq
52
bigWig
32
bed narrowPeak
32
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
tagAlign
3
tar
Organism
118
Homo sapiens
Biosample type
100
cell line
15
tissue
3
primary cell
Organ
97
liver
15
brain
3
blood
3
bodily fluid
3
spleen
2
epithelium
2
vasculature
1
blood vessel
Project
118
AMP
Genome assembly (visualization)
318
hg19
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
cell line
HepG2
97
GM12878
3
tissue
layer of hippocampus
3
spleen
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 2 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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