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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 605ChIP-seq
  • 297ATAC-seq
  • 263single cell RNA-seq
  • 250total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 32Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 605DNA binding
Target of assay
  • 326control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 145August, 2017
  • 126November, 2017
  • 75May, 2021
  • 66October, 2019
  • 31May, 2020
  • 29October, 2018
  • 27August, 2021
  • 24May, 2019
  • 17December, 2017
  • 16April, 2019
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 2November, 2019
Available data
  • 354bam
  • 205fastq
  • 152tagAlign
  • 136bigWig
  • 108bed narrowPeak
  • 38bed broadPeak
  • 34bigBed narrowPeak
  • 17bigBed broadPeak
  • 3tar
Organism
  • 604Homo sapiens
Biosample type
  • 317tissue
  • 138cell line
  • 78in vitro differentiated cells
  • 72primary cell
Organ
  • 192liver
  • 78connective tissue
  • 61pancreas
  • 55adipose tissue
  • 47brain
  • 32epithelium
  • 27vasculature
  • 26blood vessel
  • 26musculature of body
  • 21heart
  • 19limb
  • 13kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 7vein
  • 6blood
  • 6bodily fluid
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
Project
  • 605AMP
Genome assembly (visualization)
  • 1305hg19
  • GRCh38
Lab
  • 517AMP-T2D consortium
  • 70Kyle Gaulton, UCSD
  • 18Bing Ren, UCSD
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

605 results

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Clear Filters
ChIP-seq
tissue
liver70
islet of Langerhans46
subcutaneous abdominal adipose tissue36
skeletal muscle tissue22
tibial nerve11
cell line
HepG2117
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
in vitro differentiated cells
embryonic stem cell38
adipocyte19
neural progenitor cell8
pancreatic endoderm5
Hepatic endoderm2
primary cell
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein7
pancreatic alpha cell6
pancreatic beta cell6
cardiac fibroblast2
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