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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
93
ChIP-seq
2
ATAC-seq
Assay category
93
DNA binding
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
26
August, 2017
3
October, 2017
Available data
1336
bam
1143
bigWig
1099
bed narrowPeak
763
fastq
744
bigBed narrowPeak
298
tagAlign
93
bed broadPeak
58
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
87
Homo sapiens
Biosample type
58
cell line
35
tissue
primary cell
Organ
58
liver
13
musculature of body
12
pancreas
9
brain
1
adipose tissue
1
connective tissue
Project
93
AMP
Genome assembly (visualization)
93
hg19
58
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assembly!
hg18
biosample_type!
primary cell
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
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