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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
152
single cell RNA-seq
135
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
135
DNA binding
Target of assay
172
histone
172
histone modification
95
broad histone mark
narrow histone mark
28
transcription factor
12
control
11
RNA binding protein
Date released
94
May, 2021
25
May, 2024
16
August, 2021
Available data
104
bigWig
101
bed narrowPeak
44
bam
44
tagAlign
Organism
135
Homo sapiens
Biosample type
67
primary cell
27
in vitro differentiated cells
25
tissue
16
cell line
Organ
25
heart
16
liver
Project
91
AMP
44
T1D
Genome assembly (visualization)
79
hg19
69
GRCh38
Lab
AMP-T2D consortium
94
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
16
Bing Ren, UCSD
assembly!
hg18
lab.title!
AMP-T2D consortium
month_released!
August, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
23
in vitro differentiated cells
embryonic stem cell
27
tissue
left cardiac atrium
25
cell line
HepG2
16
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