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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
79
DNA binding
Target of assay
67
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
49
November, 2017
13
December, 2017
10
August, 2017
4
August, 2021
3
November, 2018
Available data
95
bam
72
fastq
tagAlign
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
Organism
79
Homo sapiens
Biosample type
56
cell line
22
tissue
1
in vitro differentiated cells
Organ
79
liver
58
heart
56
connective tissue
50
pancreas
47
adipose tissue
26
epithelium
21
blood vessel
21
vasculature
20
brain
18
limb
13
kidney
11
nerve
10
musculature of body
8
spleen
7
artery
7
embryo
6
blood
6
bodily fluid
5
vein
4
gonad
4
ovary
3
eye
1
lymph node
Project
79
AMP
Genome assembly (visualization)
hg19
329
GRCh38
Lab
75
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
files.file_type!
tagAlign
xls
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
cell line
HepG2
56
tissue
liver
19
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
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