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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 270ATAC-seq
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 87RNA microarray
  • 83snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 566DNA binding
Target of assay
  • 306control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 4recombinant protein
Date released
  • 125November, 2017
  • 123August, 2017
  • 64October, 2019
  • 42May, 2021
  • 40May, 2024
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 17December, 2017
  • 15April, 2019
  • 14August, 2021
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 2November, 2019
Available data
  • 344bam
  • 160tagAlign
  • 153fastq
  • 97bed narrowPeak
  • 96bigWig
  • 56bigBed narrowPeak
Organism
  • 565Homo sapiens
Biosample type
  • 378tissue
  • 79in vitro differentiated cells
  • 77cell line
  • 32primary cell
Organ
  • 123liver
  • 95brain
  • 77connective tissue
  • 60heart
  • 55pancreas
  • 54adipose tissue
  • 28epithelium
  • 23blood vessel
  • 23vasculature
  • 18limb
  • 13kidney
  • 12musculature of body
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 5vein
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
Project
  • 566AMP
Genome assembly (visualization)
  • hg19
  • 1266GRCh38
Lab
  • 485AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
  • 37Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 3missing controlled_by
assembly!
  • hg19
BIOSAMPLE
ASSAY

566 results

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Clear Filters
ChIP-seq
tissue
liver62
islet of Langerhans40
left cardiac atrium40
subcutaneous abdominal adipose tissue35
layer of hippocampus22
in vitro differentiated cells
embryonic stem cell38
adipocyte19
neural progenitor cell9
pancreatic endoderm5
Hepatic endoderm2
cell line
HepG256
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
endothelial cell of umbilical vein5
cardiac fibroblast2
epithelial cell of proximal tubule2
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