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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
96
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
13
October, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
346
bam
346
bed narrowPeak
346
bigWig
321
bigBed narrowPeak
315
fastq
44
bed broadPeak
44
bigBed broadPeak
14
tagAlign
Organism
346
Homo sapiens
Biosample type
590
tissue
346
cell line
207
primary cell
105
in vitro differentiated cells
3
stem cell
Organ
261
liver
54
blood
54
bodily fluid
19
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
344
AMP
2
T1D
Genome assembly (visualization)
407
hg19
346
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
organ_slims!
embryo
BIOSAMPLE
ASSAY
346 results
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Clear Filters
ChIP-seq
cell line
HepG2
261
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
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