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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
590
ChIP-seq
177
DNase-seq
146
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
590
DNA binding
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
147
October, 2019
92
May, 2019
64
April, 2019
64
August, 2017
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
19
May, 2020
7
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
March, 2020
2
September, 2017
Available data
584
bigWig
564
bed narrowPeak
548
bam
376
bigBed narrowPeak
155
fastq
116
tagAlign
28
bed bed3+
14
bed broadPeak
1
tagAlign bed3+
Organism
584
Homo sapiens
Biosample type
590
tissue
346
cell line
207
primary cell
120
in vitro differentiated cells
3
stem cell
Organ
165
brain
106
heart
82
liver
78
pancreas
57
blood vessel
57
vasculature
47
limb
24
nerve
21
artery
20
kidney
18
adipose tissue
18
connective tissue
12
spleen
5
musculature of body
1
pituitary gland
Project
588
AMP
2
T1D
Genome assembly (visualization)
590
GRCh38
529
hg19
Lab
550
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Mark McCarthy, Oxford
month_released!
May, 2023
BIOSAMPLE
ASSAY
590 results
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Clear Filters
ChIP-seq
tissue
liver
75
left cardiac atrium
40
heart left ventricle
28
body of pancreas
26
islet of Langerhans
25
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