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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
173
DNA binding
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
281
November, 2017
178
October, 2019
173
August, 2017
97
May, 2019
77
December, 2017
65
April, 2019
61
November, 2018
45
October, 2018
32
September, 2018
30
December, 2018
27
May, 2020
23
June, 2019
21
January, 2019
16
February, 2018
August, 2021
11
November, 2019
6
May, 2021
6
October, 2017
5
February, 2021
3
March, 2020
2
September, 2017
Available data
171
bigWig
153
bam
153
fastq
132
bed narrowPeak
39
bed broadPeak
38
tagAlign
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
Organism
167
Homo sapiens
Biosample type
84
tissue
48
in vitro differentiated cells
41
primary cell
Organ
65
pancreas
62
connective tissue
18
liver
14
adipose tissue
14
epithelium
13
musculature of body
Project
173
AMP
Genome assembly (visualization)
173
hg19
151
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
27
liver
18
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
48
primary cell
skeletal muscle myoblast
15
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
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