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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1305ChIP-seq
  • 1279total RNA-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1305DNA binding
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 29control
  • 5other context
  • 5other post-translational modification
Date released
  • 281November, 2017
  • 178October, 2019
  • 173August, 2017
  • 123May, 2021
  • 97May, 2019
  • 77December, 2017
  • 65April, 2019
  • 61November, 2018
  • 45October, 2018
  • 32September, 2018
  • 30December, 2018
  • 29August, 2021
  • 27May, 2020
  • 23June, 2019
  • 21January, 2019
  • 16February, 2018
  • 11November, 2019
  • 6October, 2017
  • 5February, 2021
  • 3March, 2020
  • 2September, 2017
Available data
  • 1294bigWig
  • 1234bam
  • 1228bed narrowPeak
  • 745bigBed narrowPeak
  • 704fastq
  • 238tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1299Homo sapiens
Biosample type
  • 529tissue
  • 407cell line
  • 247primary cell
  • 119in vitro differentiated cells
  • 3stem cell
Organ
  • 429liver
  • 163pancreas
  • 123brain
  • 101epithelium
  • 79vasculature
  • 76blood vessel
  • 76connective tissue
  • 74heart
  • 54blood
  • 54bodily fluid
  • 48limb
  • 39kidney
  • 27musculature of body
  • 25artery
  • 24nerve
  • 19adipose tissue
  • 15embryo
  • 12spleen
  • 12vein
  • 2eye
  • 1pituitary gland
Project
  • 1217AMP
  • 88T1D
Genome assembly (visualization)
  • 1305hg19
  • 1266GRCh38
Lab
  • 1174AMP-T2D consortium
  • 117Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
Audit category:
  • 47inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1305 results

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Clear Filters
ChIP-seq
tissue
liver83
islet of Langerhans31
heart left ventricle29
body of pancreas26
tibial nerve24
cell line
HepG2322
GM1287854
EndoC_BH113
Panc16
smooth muscle cell of the coronary artery4
primary cell
monocyte84
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
skeletal muscle myoblast15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte48
hepatocyte14
pancreatic endoderm13
neural progenitor cell12
definitive endodermal cell7
stem cell
hESC3
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