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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
201
ChIP-seq
185
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
26
DNase-seq
16
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
201
DNA binding
Target of assay
182
histone
182
histone modification
98
broad histone mark
84
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
Date released
121
May, 2021
August, 2017
32
September, 2018
24
October, 2019
9
June, 2019
9
November, 2017
4
August, 2021
2
May, 2019
Available data
186
bigWig
178
bed narrowPeak
164
bam
88
tagAlign
41
fastq
23
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
3
bed bed3+
Organism
201
Homo sapiens
Biosample type
729
tissue
459
cell line
201
primary cell
124
in vitro differentiated cells
3
stem cell
Organ
60
epithelium
32
pancreas
23
vasculature
20
blood vessel
17
vein
9
brain
9
kidney
4
liver
3
eye
2
musculature of body
1
connective tissue
1
heart
Project
117
AMP
84
T1D
Genome assembly (visualization)
186
hg19
148
GRCh38
Lab
117
Kyle Gaulton, UCSD
84
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed bedMethyl
month_released!
August, 2017
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
17
pancreatic ductal cell
13
pancreatic endocrine cell
11
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