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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
ChIP-seq
16
pCHi-C
8
RRBS
2
DNase-seq
1
DNAme array
Assay category
27
DNA binding
Target of assay
20
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
12
August, 2017
6
October, 2019
4
June, 2019
4
May, 2021
1
August, 2021
Available data
bigWig
217
bam
206
bed narrowPeak
100
tagAlign
94
fastq
37
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
27
Homo sapiens
Biosample type
292
tissue
81
in vitro differentiated cells
68
cell line
27
primary cell
1
stem cell
Organ
20
epithelium
12
pancreas
5
blood vessel
5
vasculature
5
vein
1
connective tissue
1
eye
1
heart
1
kidney
1
liver
1
musculature of body
Project
27
AMP
Lab
27
AMP-T2D consortium
Audit category:
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bigWig
hic
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
naive thymus-derived CD4-positive, alpha-beta T cell
2
cardiac fibroblast
1
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