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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
72
ChIP-seq
1
ATAC-seq
Assay category
72
DNA binding
Target of assay
47
transcription factor
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
August, 2017
October, 2017
2
October, 2019
Available data
1330
bam
1166
bigWig
1140
bed narrowPeak
743
bigBed narrowPeak
663
fastq
296
tagAlign
72
bed broadPeak
66
bigBed broadPeak
20
bed bed3+
3
tar
1
tagAlign bed3+
Organism
72
Homo sapiens
Biosample type
58
cell line
8
primary cell
6
tissue
Organ
58
liver
12
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
72
AMP
Genome assembly (visualization)
72
hg19
55
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
13
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
October, 2017
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
cell line
HepG2
58
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
tissue
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
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