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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
84
RNA microarray
42
ATAC-seq
29
ChIP-seq
9
single cell RNA-seq
7
pCHi-C
6
MeRIP-seq
5
Hi-C
3
DNase-seq
2
Capture-C
1
RRBS
1
STARR-seq
Assay category
29
DNA binding
Target of assay
31
histone
31
histone modification
17
narrow histone mark
broad histone mark
7
control
5
transcription factor
2
RNA binding protein
Date released
11
June, 2019
7
November, 2019
4
December, 2017
4
May, 2021
2
October, 2019
1
March, 2020
Available data
29
bam
22
bed narrowPeak
22
bigWig
8
bigBed narrowPeak
4
fastq
3
tagAlign
Organism
29
Homo sapiens
Biosample type
11
primary cell
9
cell line
7
in vitro differentiated cells
2
tissue
Organ
19
epithelium
kidney
9
pancreas
7
connective tissue
4
embryo
4
heart
4
musculature of body
2
brain
Project
27
AMP
2
T1D
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
29
AMP-T2D consortium
Audit category:
29
inconsistent ontology term
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
blood
kidney
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
primary cell
cardiac fibroblast
4
skeletal muscle satellite cell
4
mesenchymal stem cell
3
cell line
EndoC_BH1
9
in vitro differentiated cells
Hepatic endoderm
4
cardiomyocytes
3
tissue
brodmann area 43
1
insular gyrus
1
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