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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1000
total RNA-seq
881
ChIP-seq
254
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
881
DNA binding
Target of assay
620
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
185
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
154
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
11
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
697
bam
591
bed narrowPeak
590
bigWig
374
bigBed narrowPeak
234
tagAlign
194
fastq
33
bed broadPeak
14
bed bed3+
1
tagAlign bed3+
Organism
874
Homo sapiens
Biosample type
881
tissue
471
cell line
235
primary cell
192
in vitro differentiated cells
3
stem cell
Organ
205
brain
155
liver
123
heart
107
pancreas
73
blood vessel
73
vasculature
66
limb
62
connective tissue
61
adipose tissue
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
879
AMP
2
T1D
Genome assembly (visualization)
565
GRCh38
504
hg19
Lab
841
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
881 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
61
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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