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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
234
DNA binding
Target of assay
94
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
15
recombinant protein
6
chromatin remodeller
Date released
November, 2017
63
December, 2017
50
May, 2020
48
August, 2017
46
November, 2018
22
August, 2021
5
October, 2019
Available data
193
bam
162
bed narrowPeak
162
bigWig
134
fastq
101
bigBed narrowPeak
74
tagAlign
6
bed bed3+
Organism
234
Homo sapiens
Biosample type
155
tissue
60
cell line
15
in vitro differentiated cells
4
primary cell
Organ
234
liver
164
pancreas
136
connective tissue
134
heart
123
brain
102
epithelium
96
blood vessel
96
vasculature
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
234
AMP
Genome assembly (visualization)
161
hg19
141
GRCh38
Lab
216
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ChIP-seq
tissue
liver
145
right lobe of liver
10
cell line
HepG2
60
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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