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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
291
DNA binding
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
54
control
52
transcription factor
9
RNA binding protein
5
chromatin remodeller
Date released
396
November, 2017
257
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
93
December, 2017
80
April, 2019
74
October, 2018
67
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
13
November, 2019
11
October, 2017
8
February, 2021
6
September, 2017
3
March, 2020
Available data
176
bam
176
fastq
162
bigWig
161
bed narrowPeak
85
tagAlign
62
bigBed narrowPeak
39
bed broadPeak
19
bed bed3+
13
bigBed broadPeak
Organism
284
Homo sapiens
Biosample type
161
tissue
62
in vitro differentiated cells
41
primary cell
27
cell line
Organ
100
connective tissue
72
pancreas
48
liver
38
adipose tissue
27
blood
27
bodily fluid
26
epithelium
22
musculature of body
7
spleen
Project
291
AMP
Genome assembly (visualization)
164
hg19
142
GRCh38
Lab
291
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
291 results
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Clear Filters
ChIP-seq
tissue
liver
48
subcutaneous abdominal adipose tissue
36
islet of Langerhans
32
skeletal muscle tissue
22
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
62
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
cell line
GM12878
27
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