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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
50
August, 2017
23
October, 2018
Available data
37
bam
37
fastq
19
bigWig
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
Organism
73
Homo sapiens
Biosample type
73
tissue
Organ
507
liver
218
brain
209
pancreas
147
connective tissue
134
heart
124
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
spleen
19
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
73
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
12
missing controlled_by
audit.WARNING.category!
inconsistent control read length
lab.title!
Bing Ren, UCSD
organ_slims!
spleen
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
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