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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
13
histone
13
histone modification
11
transcription factor
9
narrow histone mark
7
chromatin remodeller
4
broad histone mark
1
RNA binding protein
Date released
November, 2017
16
August, 2017
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
24
bam
24
bed narrowPeak
24
bigWig
24
fastq
12
bigBed narrowPeak
4
bed bed3+
Organism
24
Homo sapiens
Biosample type
8
in vitro differentiated cells
6
tissue
5
cell line
5
primary cell
Organ
9
pancreas
6
connective tissue
6
liver
4
epithelium
Project
24
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
24
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
24
inconsistent control read length
5
inconsistent control run_type
3
inconsistent assembly
month_released!
December, 2017
November, 2017
September, 2018
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
cell line
HepG2
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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