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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
185
ChIP-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
185
DNA binding
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
51
August, 2017
37
May, 2021
32
September, 2018
27
June, 2019
24
October, 2019
6
November, 2017
4
August, 2021
4
May, 2019
Available data
153
bigWig
148
bam
132
bed narrowPeak
89
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
185
Homo sapiens
Biosample type
811
tissue
185
primary cell
149
in vitro differentiated cells
121
cell line
3
stem cell
Organ
87
epithelium
70
pancreas
21
vasculature
19
blood vessel
17
vein
13
kidney
11
connective tissue
10
musculature of body
6
brain
4
heart
4
liver
2
eye
Project
185
AMP
T1D
Genome assembly (visualization)
153
hg19
114
GRCh38
Lab
152
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
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