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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
904
ChIP-seq
580
total RNA-seq
241
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
904
DNA binding
Target of assay
625
histone modification
624
histone
321
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
194
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
Available data
720
bam
613
bigWig
593
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
tagAlign bed3+
Organism
897
Homo sapiens
Biosample type
904
tissue
474
cell line
198
in vitro differentiated cells
195
primary cell
3
stem cell
Organ
208
brain
155
liver
123
heart
115
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
904
AMP
T1D
Genome assembly (visualization)
587
GRCh38
526
hg19
Lab
864
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
files.file_type!
tagAlign bed3+
month_released!
February, 2021
BIOSAMPLE
ASSAY
904 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
69
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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