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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 106DNA binding
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 85May, 2021
  • 18August, 2021
  • 3March, 2020
Available data
  • 102bed narrowPeak
  • 102bigWig
  • 88bam
  • 84tagAlign
Organism
  • 106Homo sapiens
Biosample type
  • 84primary cell
  • 20cell line
  • 2tissue
Organ
  • 18liver
  • 4pancreas
  • 2epithelium
Project
  • 88T1D
  • 18AMP
Genome assembly (visualization)
  • 102hg19
  • 88GRCh38
Lab
  • 84Kyle Gaulton, UCSD
  • 18Bing Ren, UCSD
  • 4AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

106 results

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