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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
333
DNA binding
Target of assay
252
transcription factor
66
recombinant protein
60
control
35
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
18
August, 2021
Available data
315
fastq
314
bam
282
bigWig
263
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
Organism
333
Homo sapiens
Biosample type
333
cell line
Organ
333
liver
Project
333
AMP
Genome assembly (visualization)
280
hg19
217
GRCh38
Lab
315
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
June, 2019
November, 2018
month_released!!
June, 2019
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
cell line
HepG2
333
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