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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 378ChIP-seq
  • 14total RNA-seq
  • 2Hi-C
  • 2STARR-seq
  • 2pCHi-C
  • 1ATAC-seq
  • 1WGBS
  • 1whole genome sequencing assay
Assay category
  • 378DNA binding
Target of assay
  • 297transcription factor
  • 82recombinant protein
  • 60control
  • 54RNA binding protein
  • 20chromatin remodeller
  • 18histone
  • 18histone modification
  • 9broad histone mark
  • 9narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 45November, 2018
  • 18August, 2021
Available data
  • 360fastq
  • 359bam
  • 326bigWig
  • 307bed narrowPeak
  • 293bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 12tagAlign
  • 3tar
Organism
  • 378Homo sapiens
Biosample type
  • 378cell line
Organ
  • 378liver
Project
  • 378AMP
Genome assembly (visualization)
  • 322hg19
  • 261GRCh38
Lab
  • 360AMP-T2D consortium
  • 18Bing Ren, UCSD
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

378 results

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