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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 1387ChIP-seq
  • 502ATAC-seq
  • 369single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1387DNA binding
Target of assay
  • 979histone modification
  • 978histone
  • 495narrow histone mark
  • 482broad histone mark
  • 255control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 296August, 2017
  • 219October, 2019
  • 164May, 2021
  • 120May, 2019
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 74October, 2018
  • 50May, 2020
  • 40May, 2024
  • 32September, 2018
  • 31June, 2019
  • 25August, 2021
  • 24February, 2018
  • 15October, 2017
  • 10November, 2018
  • 7December, 2018
  • 7January, 2019
  • 6September, 2017
  • 2March, 2020
Available data
  • 1113bam
  • 979bigWig
  • 933bed narrowPeak
  • 448bigBed narrowPeak
  • 437fastq
  • 378tagAlign
  • 56bed broadPeak
  • 53bed bed3+
  • 21bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 1380Homo sapiens
Biosample type
  • 907tissue
  • cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 218brain
  • 190pancreas
  • 174liver
  • 153connective tissue
  • 128heart
  • 114epithelium
  • 96vasculature
  • 93blood vessel
  • 73adipose tissue
  • 66limb
  • 42kidney
  • 39musculature of body
  • 35nerve
  • 28artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1301AMP
  • 86T1D
Genome assembly (visualization)
  • 920GRCh38
  • 898hg19
Lab
  • 1193AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 34inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1387 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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