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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ATAC-seq
227
single cell RNA-seq
216
ChIP-seq
216
total RNA-seq
87
RNA microarray
62
snATAC-seq
51
pCHi-C
30
Hi-C
21
RRBS
16
WGBS
5
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
216
DNA binding
Target of assay
199
histone
199
histone modification
104
broad histone mark
95
narrow histone mark
control
17
transcription factor
6
RNA binding protein
Date released
84
August, 2017
40
May, 2024
34
May, 2021
23
October, 2019
14
August, 2021
14
November, 2017
6
October, 2017
1
April, 2019
Available data
1255
bigWig
1215
bed narrowPeak
bam
787
bigBed narrowPeak
591
fastq
300
tagAlign
114
bed broadPeak
79
bigBed broadPeak
30
bed bed3+
3
tar
1
tagAlign bed3+
Organism
216
Homo sapiens
Biosample type
167
tissue
in vitro differentiated cells
34
primary cell
15
cell line
Organ
41
heart
35
liver
32
connective tissue
31
adipose tissue
21
brain
19
musculature of body
14
pancreas
4
gonad
4
ovary
2
eye
1
limb
1
lymph node
Project
216
AMP
Genome assembly (visualization)
68
hg19
42
GRCh38
Lab
132
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
1
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
bam
month_released!
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
tissue
left cardiac atrium
40
islet of Langerhans
35
subcutaneous abdominal adipose tissue
31
liver
20
skeletal muscle tissue
19
+ See 9 more…
primary cell
CD8-positive, alpha-beta T cell
30
naive thymus-derived CD4-positive, alpha-beta T cell
2
monocyte
1
neutrophil
1
cell line
HepG2
15
See all biosamples
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