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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1673ChIP-seq
  • 1391total RNA-seq
  • 489ATAC-seq
  • 367single cell RNA-seq
  • 211DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 52pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1GRO-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1673DNA binding
Target of assay
  • 905histone modification
  • 904histone
  • 465transcription factor
  • 459narrow histone mark
  • 445broad histone mark
  • 298control
  • 103RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 242October, 2019
  • 229August, 2017
  • 122May, 2021
  • 120May, 2019
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 51December, 2017
  • 50May, 2020
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 22August, 2021
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1432bam
  • 1275bigWig
  • 1215bed narrowPeak
  • 787bigBed narrowPeak
  • 737fastq
  • 358tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 34bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1666Homo sapiens
Biosample type
  • 907tissue
  • 484cell line
  • 279primary cell
  • in vitro differentiated cells
  • 3stem cell
Organ
  • 537liver
  • 218brain
  • 215pancreas
  • 134heart
  • 107epithelium
  • 102vasculature
  • 99blood vessel
  • 86connective tissue
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1585AMP
  • 88T1D
Genome assembly (visualization)
  • 1186hg19
  • 1146GRCh38
Lab
  • 1498AMP-T2D consortium
  • 117Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 52inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 83missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

1673 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
stem cell
hESC3
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