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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
117
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
763
DNA binding
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
128
August, 2017
94
December, 2017
70
November, 2018
58
October, 2018
34
December, 2018
25
January, 2019
24
February, 2018
9
October, 2017
6
September, 2017
Available data
1336
bam
1143
bigWig
1099
bed narrowPeak
763
fastq
744
bigBed narrowPeak
298
tagAlign
93
bed broadPeak
58
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
756
Homo sapiens
Biosample type
420
cell line
220
tissue
120
in vitro differentiated cells
primary cell
3
stem cell
Organ
452
liver
90
connective tissue
77
pancreas
60
blood
60
bodily fluid
37
adipose tissue
22
embryo
20
spleen
19
epithelium
9
brain
Project
763
AMP
Genome assembly (visualization)
622
hg19
575
GRCh38
Lab
763
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
month_released!
August, 2020
BIOSAMPLE
ASSAY
763 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
GM12878
60
tissue
liver
67
body of pancreas
33
islet of Langerhans
28
spleen
20
pancreas
16
+ See 6 more…
in vitro differentiated cells
adipocyte
53
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
primitive gut cell
8
+ See 5 more…
stem cell
hESC
3
See all biosamples
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