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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
106
total RNA-seq
47
ATAC-seq
23
pCHi-C
22
DNase-seq
9
single cell RNA-seq
9
small RNA-seq
4
Hi-C
4
MeRIP-seq
3
FAIRE-seq
3
snATAC-seq
2
Capture-C
2
snDrop-seq
Assay category
118
DNA binding
Target of assay
74
histone
74
histone modification
57
narrow histone mark
31
transcription factor
17
broad histone mark
13
control
9
RNA binding protein
Date released
41
October, 2019
30
August, 2017
21
August, 2021
11
May, 2021
6
October, 2017
3
December, 2017
2
March, 2020
2
September, 2017
1
April, 2019
1
October, 2018
Available data
99
bam
86
bigWig
75
bed narrowPeak
66
tagAlign
36
fastq
32
bed bed3+
3
bigBed narrowPeak
1
tagAlign bed3+
Organism
118
Homo sapiens
Biosample type
79
tissue
primary cell
39
in vitro differentiated cells
Organ
38
brain
23
pancreas
9
connective tissue
6
liver
2
adipose tissue
1
kidney
1
pituitary gland
Project
116
AMP
2
T1D
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
107
AMP-T2D consortium
11
Kyle Gaulton, UCSD
Audit category:
12
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
primary cell
files.read_length!
100
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
22
brain
6
liver
6
angular gyrus
2
white adipose tissue
2
+ See 41 more…
in vitro differentiated cells
neural progenitor cell
21
embryonic stem cell
11
adipocyte
7
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