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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
141
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
141
DNA binding
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
1
October, 2019
Available data
90
bam
90
fastq
66
bigWig
49
bed narrowPeak
22
tagAlign
11
bed bed3+
6
bigBed narrowPeak
1
bed broadPeak
Organism
141
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
primary cell
Organ
548
liver
209
brain
148
pancreas
141
connective tissue
129
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
epithelium
37
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
141
AMP
Genome assembly (visualization)
67
hg19
66
GRCh38
Lab
141
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
month_released!
April, 2020
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
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in vitro differentiated cells
adipocyte
67
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