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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
148
ChIP-seq
63
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
6
single cell RNA-seq
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
148
DNA binding
Target of assay
93
histone
93
histone modification
51
broad histone mark
42
narrow histone mark
36
control
19
transcription factor
9
RNA binding protein
Date released
56
August, 2017
51
October, 2018
13
November, 2019
13
October, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
128
bam
103
bigWig
94
bed narrowPeak
77
fastq
59
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
141
Homo sapiens
Biosample type
117
tissue
primary cell
28
cell line
3
in vitro differentiated cells
Organ
485
liver
209
brain
148
pancreas
141
connective tissue
129
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
kidney
35
nerve
34
artery
29
musculature of body
20
spleen
18
epithelium
9
embryo
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
144
AMP
4
T1D
Genome assembly (visualization)
105
hg19
99
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
December, 2017
May, 2022
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
cell line
EndoC_BH1
15
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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