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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
89
total RNA-seq
9
WGBS
6
single cell RNA-seq
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
243
DNA binding
Target of assay
161
histone modification
160
histone
93
broad histone mark
66
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
397
November, 2017
243
August, 2017
218
October, 2019
115
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
44
May, 2021
40
May, 2024
39
August, 2021
34
December, 2018
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
0
April, 2018
Available data
130
bigWig
128
bam
128
fastq
104
bed narrowPeak
73
tagAlign
33
bed bed3+
26
bed broadPeak
18
bigBed narrowPeak
Organism
236
Homo sapiens
Biosample type
176
tissue
67
in vitro differentiated cells
primary cell
Organ
117
connective tissue
56
pancreas
50
adipose tissue
48
liver
22
musculature of body
Project
243
AMP
Genome assembly (visualization)
132
hg19
112
GRCh38
Lab
243
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
September, 2020
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ChIP-seq
tissue
liver
48
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
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