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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
104
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
267
DNA binding
Target of assay
177
histone modification
176
histone
101
broad histone mark
74
narrow histone mark
45
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
397
November, 2017
243
August, 2017
217
October, 2019
115
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
44
May, 2021
40
May, 2024
39
August, 2021
34
December, 2018
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
152
bam
152
fastq
146
bigWig
120
bed narrowPeak
73
tagAlign
33
bed bed3+
26
bed broadPeak
18
bigBed narrowPeak
Organism
260
Homo sapiens
Biosample type
176
tissue
91
in vitro differentiated cells
primary cell
Organ
117
connective tissue
56
pancreas
50
adipose tissue
48
liver
22
musculature of body
9
embryo
Project
267
AMP
Genome assembly (visualization)
148
hg19
128
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
lymph node
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
tissue
liver
48
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
pancreatic endoderm
9
definitive endodermal cell
3
embryonic stem cell
3
endocrine cell
3
+ See 2 more…
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