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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
152
ATAC-seq
80
single cell RNA-seq
67
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
67
DNA binding
Target of assay
151
histone
histone modification
78
broad histone mark
73
narrow histone mark
48
control
19
transcription factor
9
RNA binding protein
Date released
28
August, 2017
21
October, 2018
6
October, 2019
6
September, 2017
3
November, 2019
2
May, 2021
1
May, 2019
Available data
61
bam
47
fastq
19
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
4
tagAlign
Organism
66
Homo sapiens
Biosample type
44
tissue
12
primary cell
9
cell line
2
in vitro differentiated cells
Organ
449
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
67
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
Lab
67
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
6
missing controlled_by
biosample_type!
stem cell
organ_slims!
spleen
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
20
body of pancreas
18
pancreas
4
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
6
EndoC_BH1
3
in vitro differentiated cells
pancreatic PP cell
2
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