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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
24
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
418
DNA binding
Target of assay
337
transcription factor
81
recombinant protein
76
histone
76
histone modification
70
RNA binding protein
38
broad histone mark
38
narrow histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
23
June, 2019
16
October, 2019
15
January, 2019
14
August, 2017
14
December, 2017
4
May, 2019
Available data
847
bam
766
bigWig
724
bed narrowPeak
628
fastq
418
bigBed narrowPeak
160
tagAlign
73
bed broadPeak
73
bigBed broadPeak
bed bed3+
3
tar
Organism
418
Homo sapiens
Biosample type
353
cell line
tissue
51
primary cell
14
in vitro differentiated cells
Organ
307
liver
54
blood
54
bodily fluid
36
epithelium
14
vasculature
12
blood vessel
10
vein
9
connective tissue
8
musculature of body
brain
6
kidney
6
pancreas
3
heart
2
eye
Project
418
AMP
Genome assembly (visualization)
414
hg19
385
GRCh38
Lab
418
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
files.file_type!
bed bed3+
organ_slims!
brain
BIOSAMPLE
ASSAY
418 results
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ChIP-seq
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
4
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in vitro differentiated cells
hepatocyte
14
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