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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
397
DNA binding
Target of assay
315
transcription factor
81
recombinant protein
79
histone
79
histone modification
71
RNA binding protein
41
narrow histone mark
38
broad histone mark
30
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
December, 2018
23
June, 2019
16
October, 2019
15
January, 2019
14
August, 2017
14
December, 2017
4
May, 2019
Available data
728
bigWig
703
bed narrowPeak
693
bam
509
fastq
397
bigBed narrowPeak
144
tagAlign
79
bed broadPeak
79
bigBed broadPeak
19
bed bed3+
3
tar
Organism
397
Homo sapiens
Biosample type
tissue
326
cell line
57
primary cell
14
in vitro differentiated cells
Organ
307
liver
36
epithelium
27
blood
27
bodily fluid
14
vasculature
12
blood vessel
10
vein
9
connective tissue
8
musculature of body
6
brain
6
kidney
6
pancreas
3
heart
2
eye
Project
397
AMP
Genome assembly (visualization)
393
hg19
364
GRCh38
Lab
397
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
month_released!
December, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
397 results
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ChIP-seq
cell line
HepG2
293
GM12878
27
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
4
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in vitro differentiated cells
hepatocyte
14
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