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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
12
June, 2019
Available data
65
bam
56
bigWig
53
fastq
51
bed narrowPeak
14
tagAlign
9
bigBed narrowPeak
7
bed bed3+
Organism
79
Homo sapiens
Biosample type
tissue
67
in vitro differentiated cells
12
primary cell
Organ
397
liver
129
epithelium
101
pancreas
79
connective tissue
60
blood
60
bodily fluid
29
vasculature
26
blood vessel
25
kidney
22
embryo
17
vein
11
heart
10
musculature of body
9
brain
6
artery
3
eye
Project
79
AMP
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
79
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
organ_slims!
skeleton
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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