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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 496total RNA-seq
  • 271ATAC-seq
  • 189single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 964DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 150control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 165May, 2021
  • 120August, 2017
  • 60November, 2018
  • 47October, 2019
  • 46December, 2017
  • 43August, 2021
  • 32September, 2018
  • 31June, 2019
  • 27December, 2018
  • 24February, 2018
  • 18January, 2019
  • 13November, 2019
  • 8February, 2021
  • 5May, 2019
  • 1March, 2020
Available data
  • 856bam
  • 775bigWig
  • 730bed narrowPeak
  • 637fastq
  • 424bigBed narrowPeak
  • 160tagAlign
  • 79bed broadPeak
  • 79bigBed broadPeak
  • 25bed bed3+
  • 3tar
Organism
  • 964Homo sapiens
Biosample type
  • tissue
  • 484cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 397liver
  • 129epithelium
  • 101pancreas
  • 79connective tissue
  • 60blood
  • 60bodily fluid
  • 29vasculature
  • 26blood vessel
  • 25kidney
  • 22embryo
  • 17vein
  • 11heart
  • 10musculature of body
  • 9brain
  • 6artery
  • 3eye
Project
  • 878AMP
  • 86T1D
Genome assembly (visualization)
  • 776hg19
  • 676GRCh38
Lab
  • 792AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 18Bing Ren, UCSD
Audit category:
  • 57inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

964 results

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Clear Filters
ChIP-seq
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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