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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
400
DNA binding
Target of assay
317
transcription factor
89
recombinant protein
80
control
61
RNA binding protein
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
1
other context
1
other post-translational modification
Date released
246
November, 2017
53
November, 2018
25
December, 2018
23
October, 2019
18
August, 2021
13
November, 2019
12
January, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
435
bam
390
fastq
381
bigWig
362
bed narrowPeak
323
bigBed narrowPeak
54
bed broadPeak
bigBed broadPeak
20
tagAlign
3
tar
Organism
400
Homo sapiens
Biosample type
905
tissue
400
cell line
258
primary cell
195
in vitro differentiated cells
stem cell
Organ
304
liver
50
blood
50
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
398
AMP
2
T1D
Genome assembly (visualization)
323
hg19
278
GRCh38
Lab
382
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
stem cell
files.file_type!
bigBed broadPeak
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
cell line
HepG2
304
GM12878
50
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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