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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
85
DNA binding
Target of assay
60
control
20
transcription factor
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
2
broad histone mark
1
recombinant protein
Date released
66
November, 2017
18
August, 2021
1
November, 2018
Available data
360
fastq
359
bam
326
bigWig
307
bed narrowPeak
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
Organism
85
Homo sapiens
Biosample type
110
tissue
85
cell line
4
primary cell
1
in vitro differentiated cells
Organ
85
liver
22
pancreas
15
epithelium
10
kidney
6
artery
6
blood
6
blood vessel
6
bodily fluid
6
heart
6
vasculature
Project
85
AMP
Genome assembly (visualization)
33
hg19
Lab
67
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
stem cell
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
cell line
HepG2
85
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